import mne from mne.time_frequency import psd_array_multitaper import matplotlib.pyplot as plt import matplotlib as mpl import numpy as np from sklearn.metrics import ConfusionMatrixDisplay, confusion_matrix from .utils import cut_epochs from .feature_extractors import filterbank_extractor def plot_embeddings(embd, y, event_id, size=20, figsize=(4, 5), show_legend=True): fig, ax = plt.subplots(figsize=figsize) for label in event_id.keys(): l = event_id[label] idx = y == l ax.scatter(embd[idx, 0], embd[idx, 1], s=size, label=label) ax.set_xlabel(r"PC1") ax.set_ylabel(r"PC2") if show_legend: ax.legend(frameon=False) ax.spines['top'].set_visible(False) ax.spines['right'].set_visible(False) return fig def snapshot_brain(fig_3d, info, data=None, show_name=False): if data is not None: cmap = mpl.cm.viridis norm = mpl.colors.Normalize(vmin=data.min(), vmax=data.max()) mappable = mpl.cm.ScalarMappable(norm=norm, cmap=cmap) directions = [0, 180] # right, left figs = [] for d in directions: # right mne.viz.set_3d_view(fig_3d, azimuth=d, elevation=70) xy, im = mne.viz.snapshot_brain_montage(fig_3d, info, hide_sensors=False) fig, ax = plt.subplots(figsize=(5, 5)) ax.imshow(im, interpolation='none') ax.set_axis_off() if data is not None: fig.subplots_adjust(right=0.8) cbar_ax = fig.add_axes([0.85, 0.15, 0.05, 0.7]) fig.colorbar(mappable, cax=cbar_ax) if show_name: xy_pts = np.vstack([xy[ch] for ch in info["ch_names"]]) for i, pos in enumerate(xy_pts): ax.text(*pos, i, color='white') figs.append(fig) return figs def plot_time_frequency(data, events, sfreq, freqs, epoch_time_range, event_desc): """ data: numpy.ndarray, (n_ch, n_times) events: ndarray (n_events, 3), the first column is onset index, the second is duration, and the third is event type freqs: numpy.ndarray, frequency bands to filter epoch_time_range: tuple, (t_onset, t_offset) event_desc: dict {id: name} """ # extract power, (n_ch, n_freqs, n_times) power = filterbank_extractor(data, sfreq, freqs, reshape_freqs_dim=False) power = 10 * np.log10(power) # normalize by freqs power -= power.mean(axis=(0, 2), keepdims=True) power /= power.std(axis=(0, 2), keepdims=True) # image vlim mean_, std_ = power.mean(), power.std() # cut epochs epochs = cut_epochs((*epoch_time_range, sfreq), power, events[:, 0]) # average by event type classes = np.unique(events[:, -1]) fig, axes = plt.subplots(1, len(classes), figsize=(10, 5)) for ax, y_ in zip(axes, classes): average_power = epochs[events[:, -1] == y_].mean(axis=(0, 1)) # keep freqencies and times im = ax.imshow(average_power, cmap='RdBu_r', extent=[*epoch_time_range, freqs[0], freqs[-1]], vmin=mean_ - 0.5 * std_, vmax=mean_ + 0.5 * std_, aspect='auto', origin='lower') ax.axvline(0, color='k') ax.set_title(event_desc[y_]) fig.subplots_adjust(right=0.8) cbar_ax = fig.add_axes([0.85, 0.15, 0.05, 0.7]) fig.colorbar(im, cax=cbar_ax) return fig def plot_ersd(data, events, sfreq, epoch_time_range, event_id, rest_event=0): n_ch = data.shape[0] event_desc = {v:k for k, v in event_id.items()} epochs = cut_epochs((*epoch_time_range, sfreq), data, events[:, 0]) psd, freqs = psd_array_multitaper(epochs, sfreq, fmin=0, fmax=200, bandwidth=15) mean_psd_rest = psd[events[:, -1] == rest_event].mean(axis=0) ersds = [] for e in np.unique(events[:, -1]): if e != rest_event: mean_psd = psd[events[:, -1] == e].mean(axis=0) ersd = mean_psd / mean_psd_rest - 1 ersds.append((event_desc[e], ersd)) fig, axes = plt.subplots(n_ch, len(ersds), figsize=(3 * len(ersds), n_ch), sharex=True, sharey=True) for i in range(n_ch): if len(ersds) == 1: for j, ersd in enumerate(ersds): if i == 0: axes[i].set_title(ersd[0]) axes[i].plot(freqs, ersd[1][i]) axes[i].set_ylabel(f'ch_{i + 1}') axes[i].axhline(0, color='gray', linestyle='--') else: for j, ersd in enumerate(ersds): if i == 0: axes[i, j].set_title(ersd[0]) axes[i, j].plot(freqs, ersd[1][i]) axes[i, j].set_ylabel(f'ch_{i + 1}') axes[i, j].axhline(0, color='gray', linestyle='--') fig.suptitle('ERSD') return fig def plot_confusion_matrix(y_true, y_pred): cm = confusion_matrix(y_true, y_pred, normalize='true') disp = ConfusionMatrixDisplay(cm) disp.plot() return disp.figure_ def plot_states(time_range, pred_states, ax, colors=None): classes = np.unique(pred_states) if colors is None: colors = [plt.get_cmap('tab10')(i)[:3] for i in range(len(classes))] for i, c in enumerate(classes): ax.fill_between(np.linspace(*time_range, len(pred_states)), 0, 1, where=(pred_states == c), alpha=0.6, color=colors[i]) return ax def plot_state_prob_with_cue(time_range, true_states, pred_probs, ax, colors=None): # normalize ax.plot(np.linspace(*time_range, len(pred_probs)), pred_probs, color='k') # for each class, fill different colors classes = np.unique(true_states) if colors is None: colors = [plt.get_cmap('tab10')(i)[:3] for i in range(len(classes))] for i, c in enumerate(classes): ax.fill_between(np.linspace(*time_range, len(true_states)), 0, 1, where=(true_states == c), alpha=0.6, color=colors[i]) return ax